Detailed information of SNP:



SNP ID: sf1212984919(Gbrowse)

Chromosome: chr12

Position: 12984919
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1401 99.43% 0.57%
All Indica799 100.00% 0.00%
All Japonica479 98.54% 1.46%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica318 97.80% 2.20%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1212984919 A->T LOC_Os12g22970(LOC_Os12g22970.1) INTRON