Detailed information of SNP:
|
SNP ID:
sf1212985501(Gbrowse)
Chromosome: chr12 Position: 12985501 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 66.03% | 33.97% |
| All Indica | 797 | 79.05% | 20.95% |
| All Japonica | 490 | 38.98% | 61.02% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 331 | 16.92% | 83.08% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212985501 | C->T | LOC_Os12g22970(LOC_Os12g22970.1) | INTRON |