Detailed information of SNP:
|
SNP ID:
sf1212985950(Gbrowse)
Chromosome: chr12 Position: 12985950 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.21% | 32.79% |
| All Indica | 799 | 79.97% | 20.03% |
| All Japonica | 496 | 40.52% | 59.48% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 334 | 18.26% | 81.74% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212985950 | A->G | LOC_Os12g22970(LOC_Os12g22970.1) | INTRON |