Detailed information of SNP:
|
SNP ID:
sf1213003503(Gbrowse)
Chromosome: chr12 Position: 13003503 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 81.99% | 18.01% |
| All Indica | 774 | 69.12% | 30.88% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 65.66% | 34.34% |
| Indica II | 206 | 80.58% | 19.42% |
| Indica Intermediate | 204 | 63.73% | 36.27% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213003503 | C->T | LOC_Os12g23000(LOC_Os12g23000.1) | INTRON |