Detailed information of SNP:
|
SNP ID:
sf1213033412(Gbrowse)
Chromosome: chr12 Position: 13033412 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 92.12% | 7.88% |
| All Indica | 768 | 90.49% | 9.51% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 368 | 97.01% | 2.99% |
| Indica II | 198 | 79.29% | 20.71% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213033412 | T->C | LOC_Os12g23060(LOC_Os12g23060.1) | Synonymous |