Detailed information of SNP:
|
SNP ID:
sf1213036209(Gbrowse)
Chromosome: chr12 Position: 13036209 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 93.95% | 6.05% |
| All Indica | 788 | 92.51% | 7.49% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 211 | 81.99% | 18.01% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213036209 | C->G | INTERGENIC | None |