Detailed information of SNP:
|
SNP ID:
sf1213042821(Gbrowse)
Chromosome: chr12 Position: 13042821 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 89.07% | 10.93% |
| All Indica | 741 | 94.20% | 5.80% |
| All Japonica | 466 | 82.19% | 17.81% |
| Aus | 56 | 82.14% | 17.86% |
| Indica I | 363 | 96.42% | 3.58% |
| Indica II | 181 | 87.85% | 12.15% |
| Indica Intermediate | 197 | 95.94% | 4.06% |
| Temperate Japonica | 332 | 93.07% | 6.93% |
| Tropical Japonica | 71 | 39.44% | 60.56% |
| Japonica Intermediate | 63 | 73.02% | 26.98% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213042821 | A->G | INTERGENIC | None |