Detailed information of SNP:



SNP ID: sf1213042821(Gbrowse)

Chromosome: chr12

Position: 13042821
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1317 89.07% 10.93%
All Indica741 94.20% 5.80%
All Japonica466 82.19% 17.81%
Aus56 82.14% 17.86%
Indica I363 96.42% 3.58%
Indica II181 87.85% 12.15%
Indica Intermediate197 95.94% 4.06%
Temperate Japonica332 93.07% 6.93%
Tropical Japonica71 39.44% 60.56%
Japonica Intermediate63 73.02% 26.98%
Group VI/Aromatic13 84.62% 15.38%
Intermediate41 85.37% 14.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1213042821 A->G INTERGENIC None