Detailed information of SNP:
|
SNP ID:
sf1213060996(Gbrowse)
Chromosome: chr12 Position: 13060996 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 92.19% | 7.81% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 483 | 82.19% | 17.81% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 329 | 90.58% | 9.42% |
| Tropical Japonica | 87 | 54.02% | 45.98% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213060996 | C->T | LOC_Os12g23100(LOC_Os12g23100.1) | Synonymous |