Detailed information of SNP:
|
SNP ID:
sf1213062990(Gbrowse)
Chromosome: chr12 Position: 13062990 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 93.11% | 6.89% |
| All Indica | 794 | 98.49% | 1.51% |
| All Japonica | 479 | 83.72% | 16.28% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 89.70% | 10.30% |
| Tropical Japonica | 84 | 58.33% | 41.67% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213062990 | G->A | LOC_Os12g23110(LOC_Os12g23110.1) | Synonymous |