Detailed information of SNP:
|
SNP ID:
sf1213063273(Gbrowse)
Chromosome: chr12 Position: 13063273 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 95.31% | 4.69% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 471 | 88.32% | 11.68% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 93.19% | 6.81% |
| Tropical Japonica | 86 | 68.60% | 31.40% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213063273 | C->G | LOC_Os12g23110(LOC_Os12g23110.1) | Non-Synonymous SNP |