Detailed information of SNP:



SNP ID: sf1213063554(Gbrowse)

Chromosome: chr12

Position: 13063554
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1358 98.01% 1.99%
All Indica793 99.37% 0.63%
All Japonica446 95.74% 4.26%
Aus65 96.92% 3.08%
Indica I374 100.00% 0.00%
Indica II208 97.60% 2.40%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica319 96.87% 3.13%
Tropical Japonica69 91.30% 8.70%
Japonica Intermediate58 94.83% 5.17%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1213063554 G->A LOC_Os12g23110(LOC_Os12g23110.1) Synonymous