Detailed information of SNP:
|
SNP ID:
sf1213063554(Gbrowse)
Chromosome: chr12 Position: 13063554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 98.01% | 1.99% |
| All Indica | 793 | 99.37% | 0.63% |
| All Japonica | 446 | 95.74% | 4.26% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 96.87% | 3.13% |
| Tropical Japonica | 69 | 91.30% | 8.70% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213063554 | G->A | LOC_Os12g23110(LOC_Os12g23110.1) | Synonymous |