Detailed information of SNP:
|
SNP ID:
sf1213063652(Gbrowse)
Chromosome: chr12 Position: 13063652 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 91.03% | 8.97% |
| All Indica | 793 | 98.11% | 1.89% |
| All Japonica | 473 | 79.07% | 20.93% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 327 | 88.69% | 11.31% |
| Tropical Japonica | 80 | 46.25% | 53.75% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213063652 | C->T | LOC_Os12g23110(LOC_Os12g23110.1) | Non-Synonymous SNP |