Detailed information of SNP:
|
SNP ID:
sf1213088715(Gbrowse)
Chromosome: chr12 Position: 13088715 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 86.88% | 13.12% |
| All Indica | 782 | 76.85% | 23.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 63.43% | 36.57% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213088715 | G->A | INTERGENIC | None |