Detailed information of SNP:
|
SNP ID:
sf1213115347(Gbrowse)
Chromosome: chr12 Position: 13115347 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 71.30% | 28.70% |
| All Indica | 694 | 47.12% | 52.88% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 323 | 26.93% | 73.07% |
| Indica II | 195 | 76.41% | 23.59% |
| Indica Intermediate | 176 | 51.70% | 48.30% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213115347 | C->T | INTERGENIC | None |