Detailed information of SNP:
|
SNP ID:
sf1213119969(Gbrowse)
Chromosome: chr12 Position: 13119969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.86% | 17.14% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213119969 | G->A | INTERGENIC | None |