Detailed information of SNP:
|
SNP ID:
sf1213125249(Gbrowse)
Chromosome: chr12 Position: 13125249 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.64% | 36.36% |
| All Indica | 799 | 37.05% | 62.95% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 18.13% | 81.87% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213125249 | T->A | INTERGENIC | None |