Detailed information of SNP:
|
SNP ID:
sf1213161635(Gbrowse)
Chromosome: chr12 Position: 13161635 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.76% | 42.24% |
| All Indica | 798 | 35.59% | 64.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 17.33% | 82.67% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213161635 | T->C | LOC_Os12g23260(LOC_Os12g23260.1) | INTRON |