Detailed information of SNP:
|
SNP ID:
sf1213168936(Gbrowse)
Chromosome: chr12 Position: 13168936 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 58.32% | 41.68% |
| All Indica | 771 | 64.85% | 35.15% |
| All Japonica | 497 | 59.15% | 40.85% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 357 | 57.98% | 42.02% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 202 | 67.82% | 32.18% |
| Temperate Japonica | 335 | 81.49% | 18.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 30.00% | 70.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213168936 | G->A | INTERGENIC | None |