Detailed information of SNP:
|
SNP ID:
sf1213183858(Gbrowse)
Chromosome: chr12 Position: 13183858 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 98.21% | 1.79% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 492 | 97.56% | 2.44% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 86.52% | 13.48% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213183858 | G->A | INTERGENIC | None |