Detailed information of SNP:
|
SNP ID:
sf1213198979(Gbrowse)
Chromosome: chr12 Position: 13198979 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1335 | 95.66% | 4.34% |
| All Indica | 717 | 92.19% | 7.81% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 319 | 91.22% | 8.78% |
| Indica II | 204 | 97.55% | 2.45% |
| Indica Intermediate | 194 | 88.14% | 11.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213198979 | A->G | LOC_Os12g23320(LOC_Os12g23320.1) | Synonymous |