Detailed information of SNP:
|
SNP ID:
sf1213201294(Gbrowse)
Chromosome: chr12 Position: 13201294 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 97.18% | 2.82% |
| All Indica | 768 | 95.05% | 4.95% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 194 | 90.72% | 9.28% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213201294 | G->A | LOC_Os12g23320(LOC_Os12g23320.1) | Non-Synonymous SNP |