Detailed information of SNP:
|
SNP ID:
sf1213203777(Gbrowse)
Chromosome: chr12 Position: 13203777 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 88.35% | 11.65% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 481 | 76.09% | 23.91% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 325 | 88.62% | 11.38% |
| Tropical Japonica | 90 | 32.22% | 67.78% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213203777 | G->A | INTERGENIC | None |