Detailed information of SNP:
|
SNP ID:
sf1213207885(Gbrowse)
Chromosome: chr12 Position: 13207885 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 57.17% | 42.83% |
| All Indica | 777 | 25.61% | 74.39% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 27.30% | 72.70% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 206 | 22.82% | 77.18% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213207885 | C->T | INTERGENIC | None |