Detailed information of SNP:
|
SNP ID:
sf1213215721(Gbrowse)
Chromosome: chr12 Position: 13215721 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 90.01% | 9.99% |
| All Indica | 772 | 91.45% | 8.55% |
| All Japonica | 491 | 86.35% | 13.65% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 363 | 91.46% | 8.54% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 200 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 49.44% | 50.56% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213215721 | A->G | INTERGENIC | None |