Detailed information of SNP:
|
SNP ID:
sf1213223682(Gbrowse)
Chromosome: chr12 Position: 13223682 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 63.51% | 36.49% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 492 | 19.72% | 80.28% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 370 | 84.05% | 15.95% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 91 | 59.34% | 40.66% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213223682 | C->T | LOC_Os12g23374(LOC_Os12g23374.1) | Non-Synonymous SNP |