Detailed information of SNP:
|
SNP ID:
sf1213223834(Gbrowse)
Chromosome: chr12 Position: 13223834 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1158 | 75.13% | 24.87% |
| All Indica | 602 | 59.63% | 40.37% |
| All Japonica | 464 | 95.47% | 4.53% |
| Aus | 49 | 73.47% | 26.53% |
| Indica I | 279 | 57.71% | 42.29% |
| Indica II | 156 | 63.46% | 36.54% |
| Indica Intermediate | 167 | 59.28% | 40.72% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 70 | 85.71% | 14.29% |
| Japonica Intermediate | 63 | 84.13% | 15.87% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 33 | 78.79% | 21.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213223834 | T->C | LOC_Os12g23374(LOC_Os12g23374.1) | Synonymous |