Detailed information of SNP:
|
SNP ID:
sf1213228652(Gbrowse)
Chromosome: chr12 Position: 13228652 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 69.55% | 30.45% |
| All Indica | 781 | 90.01% | 9.99% |
| All Japonica | 486 | 33.13% | 66.87% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 365 | 91.23% | 8.77% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 328 | 14.94% | 85.06% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213228652 | A->C | LOC_Os12g23390(LOC_Os12g23390.1) | Non-Synonymous SNP |