Detailed information of SNP:
|
SNP ID:
sf1213228944(Gbrowse)
Chromosome: chr12 Position: 13228944 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 60.88% | 39.12% |
| All Indica | 703 | 37.98% | 62.02% |
| All Japonica | 484 | 96.49% | 3.51% |
| Aus | 60 | 45.00% | 55.00% |
| Indica I | 326 | 43.25% | 56.75% |
| Indica II | 198 | 28.79% | 71.21% |
| Indica Intermediate | 179 | 38.55% | 61.45% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 92.05% | 7.95% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213228944 | T->C | LOC_Os12g23390(LOC_Os12g23390.1) | Non-Synonymous SNP |