Detailed information of SNP:
|
SNP ID:
sf1213244337(Gbrowse)
Chromosome: chr12 Position: 13244337 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 65.68% | 34.32% |
| All Indica | 797 | 90.59% | 9.41% |
| All Japonica | 494 | 21.66% | 78.34% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 333 | 10.81% | 89.19% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213244337 | C->T | LOC_Os12g23430(LOC_Os12g23430.1) | Non-Synonymous SNP |