Detailed information of SNP:
|
SNP ID:
sf1213244341(Gbrowse)
Chromosome: chr12 Position: 13244341 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 64.84% | 35.16% |
| All Indica | 789 | 90.62% | 9.38% |
| All Japonica | 493 | 19.88% | 80.12% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213244341 | G->A | LOC_Os12g23430(LOC_Os12g23430.1) | Synonymous |