Detailed information of SNP:
|
SNP ID:
sf1213247483(Gbrowse)
Chromosome: chr12 Position: 13247483 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 72.14% | 27.86% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 487 | 29.57% | 70.43% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 331 | 16.31% | 83.69% |
| Tropical Japonica | 89 | 58.43% | 41.57% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213247483 | A->T | INTERGENIC | None |