Detailed information of SNP:
|
SNP ID:
sf1213251948(Gbrowse)
Chromosome: chr12 Position: 13251948 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1313 | 88.12% | 11.88% |
| All Indica | 706 | 89.52% | 10.48% |
| All Japonica | 486 | 98.15% | 1.85% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 157 | 88.54% | 11.46% |
| Indica Intermediate | 185 | 85.41% | 14.59% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213251948 | T->C | LOC_Os12g23440(LOC_Os12g23440.1) | Synonymous |