Detailed information of SNP:
|
SNP ID:
sf1213274180(Gbrowse)
Chromosome: chr12 Position: 13274180 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 68.92% | 31.08% |
| All Indica | 792 | 65.53% | 34.47% |
| All Japonica | 492 | 85.37% | 14.63% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 373 | 78.55% | 21.45% |
| Indica II | 210 | 43.33% | 56.67% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 332 | 95.18% | 4.82% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213274180 | C->A | LOC_Os12g23480(LOC_Os12g23480.1) | SNPs that introduce stop codons |