Detailed information of SNP:
|
SNP ID:
sf1213275906(Gbrowse)
Chromosome: chr12 Position: 13275906 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 93.21% | 6.79% |
| All Indica | 782 | 90.03% | 9.97% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 87.57% | 12.43% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213275906 | A->C | INTERGENIC | None |