Detailed information of SNP:
|
SNP ID:
sf1213281188(Gbrowse)
Chromosome: chr12 Position: 13281188 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 69.60% | 30.40% |
| All Indica | 790 | 65.19% | 34.81% |
| All Japonica | 496 | 86.90% | 13.10% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 372 | 78.49% | 21.51% |
| Indica II | 210 | 42.86% | 57.14% |
| Indica Intermediate | 208 | 63.94% | 36.06% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213281188 | A->G | LOC_Os12g23490(LOC_Os12g23490.1) | Non-Synonymous SNP |