Detailed information of SNP:
|
SNP ID:
sf1213282983(Gbrowse)
Chromosome: chr12 Position: 13282983 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 68.61% | 31.39% |
| All Indica | 787 | 64.04% | 35.96% |
| All Japonica | 495 | 86.26% | 13.74% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 372 | 77.96% | 22.04% |
| Indica II | 208 | 41.83% | 58.17% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213282983 | A->G | LOC_Os12g23490(LOC_Os12g23490.1) | Non-Synonymous SNP |