Detailed information of SNP:
|
SNP ID:
sf1213294072(Gbrowse)
Chromosome: chr12 Position: 13294072 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 92.14% | 7.86% |
| All Indica | 792 | 96.84% | 3.16% |
| All Japonica | 475 | 85.26% | 14.74% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 325 | 92.62% | 7.38% |
| Tropical Japonica | 88 | 57.95% | 42.05% |
| Japonica Intermediate | 62 | 85.48% | 14.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213294072 | G->T | INTERGENIC | None |