Detailed information of SNP:
|
SNP ID:
sf1213294396(Gbrowse)
Chromosome: chr12 Position: 13294396 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1192 | 60.07% | 39.93% |
| All Indica | 628 | 76.91% | 23.09% |
| All Japonica | 455 | 31.43% | 68.57% |
| Aus | 58 | 87.93% | 12.07% |
| Indica I | 311 | 80.71% | 19.29% |
| Indica II | 155 | 68.39% | 31.61% |
| Indica Intermediate | 162 | 77.78% | 22.22% |
| Temperate Japonica | 313 | 12.14% | 87.86% |
| Tropical Japonica | 76 | 84.21% | 15.79% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213294396 | C->T | INTERGENIC | None |