Detailed information of SNP:
SNP ID:
sf1213310011(Gbrowse)
Chromosome: chr12 Position: 13310011 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1320 | 63.33% | 36.67% |
All Indica | 728 | 43.96% | 56.04% |
All Japonica | 484 | 95.87% | 4.13% |
Aus | 60 | 35.00% | 65.00% |
Indica I | 338 | 48.22% | 51.78% |
Indica II | 199 | 36.68% | 63.32% |
Indica Intermediate | 191 | 43.98% | 56.02% |
Temperate Japonica | 334 | 98.50% | 1.50% |
Tropical Japonica | 83 | 86.75% | 13.25% |
Japonica Intermediate | 67 | 94.03% | 5.97% |
Group VI/Aromatic | 11 | 63.64% | 36.36% |
Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1213310011 | T->A | LOC_Os12g23520(LOC_Os12g23520.1) | Synonymous |