Detailed information of SNP:
|
SNP ID:
sf1213310011(Gbrowse)
Chromosome: chr12 Position: 13310011 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 63.33% | 36.67% |
| All Indica | 728 | 43.96% | 56.04% |
| All Japonica | 484 | 95.87% | 4.13% |
| Aus | 60 | 35.00% | 65.00% |
| Indica I | 338 | 48.22% | 51.78% |
| Indica II | 199 | 36.68% | 63.32% |
| Indica Intermediate | 191 | 43.98% | 56.02% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 83 | 86.75% | 13.25% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213310011 | T->A | LOC_Os12g23520(LOC_Os12g23520.1) | Synonymous |