Detailed information of SNP:
|
SNP ID:
sf1213318069(Gbrowse)
Chromosome: chr12 Position: 13318069 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 56.67% | 43.33% |
| All Indica | 774 | 79.20% | 20.80% |
| All Japonica | 488 | 16.19% | 83.81% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 361 | 79.78% | 20.22% |
| Indica II | 204 | 78.92% | 21.08% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 90 | 50.00% | 50.00% |
| Japonica Intermediate | 63 | 25.40% | 74.60% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213318069 | T->C | LOC_Os12g23530(LOC_Os12g23530.1) | Non-Synonymous SNP |