Detailed information of SNP:
|
SNP ID:
sf1213318424(Gbrowse)
Chromosome: chr12 Position: 13318424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 92.78% | 7.22% |
| All Indica | 772 | 90.41% | 9.59% |
| All Japonica | 493 | 95.33% | 4.67% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 89.34% | 10.66% |
| Indica II | 202 | 91.58% | 8.42% |
| Indica Intermediate | 204 | 91.18% | 8.82% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213318424 | C->T | LOC_Os12g23530(LOC_Os12g23530.1) | Synonymous |