Detailed information of SNP:
|
SNP ID:
sf1213325380(Gbrowse)
Chromosome: chr12 Position: 13325380 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 64.83% | 35.17% |
| All Indica | 753 | 47.14% | 52.86% |
| All Japonica | 493 | 94.12% | 5.88% |
| Aus | 61 | 54.10% | 45.90% |
| Indica I | 349 | 41.55% | 58.45% |
| Indica II | 207 | 53.14% | 46.86% |
| Indica Intermediate | 197 | 50.76% | 49.24% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213325380 | G->A | INTERGENIC | None |