Detailed information of SNP:
|
SNP ID:
sf1213353163(Gbrowse)
Chromosome: chr12 Position: 13353163 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 56.90% | 43.10% |
| All Indica | 782 | 86.96% | 13.04% |
| All Japonica | 487 | 3.49% | 96.51% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 360 | 85.56% | 14.44% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 86 | 10.47% | 89.53% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213353163 | A->T | INTERGENIC | None |