Detailed information of SNP:
|
SNP ID:
sf1213420951(Gbrowse)
Chromosome: chr12 Position: 13420951 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1329 | 51.92% | 48.08% |
| All Indica | 732 | 72.54% | 27.46% |
| All Japonica | 479 | 12.53% | 87.47% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 343 | 65.31% | 34.69% |
| Indica II | 195 | 78.97% | 21.03% |
| Indica Intermediate | 194 | 78.87% | 21.13% |
| Temperate Japonica | 332 | 4.82% | 95.18% |
| Tropical Japonica | 82 | 35.37% | 64.63% |
| Japonica Intermediate | 65 | 23.08% | 76.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213420951 | A->G | INTERGENIC | None |