Detailed information of SNP:
|
SNP ID:
sf1213422959(Gbrowse)
Chromosome: chr12 Position: 13422959 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1309 | 77.01% | 22.99% |
| All Indica | 723 | 65.01% | 34.99% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 46 | 45.65% | 54.35% |
| Indica I | 335 | 75.52% | 24.48% |
| Indica II | 193 | 52.33% | 47.67% |
| Indica Intermediate | 195 | 59.49% | 40.51% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213422959 | A->G | INTERGENIC | None |