Detailed information of SNP:
|
SNP ID:
sf1213426584(Gbrowse)
Chromosome: chr12 Position: 13426584 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 98.58% | 1.42% |
| All Indica | 793 | 99.37% | 0.63% |
| All Japonica | 492 | 97.36% | 2.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 86.67% | 13.33% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213426584 | G->A | LOC_Os12g23660(LOC_Os12g23660.1) | Non-Synonymous SNP |