Detailed information of SNP:
|
SNP ID:
sf1213435945(Gbrowse)
Chromosome: chr12 Position: 13435945 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 94.05% | 5.95% |
| All Indica | 794 | 98.61% | 1.39% |
| All Japonica | 478 | 85.77% | 14.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 328 | 96.65% | 3.35% |
| Tropical Japonica | 85 | 38.82% | 61.18% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213435945 | G->A | INTERGENIC | None |