Detailed information of SNP:
|
SNP ID:
sf1213436767(Gbrowse)
Chromosome: chr12 Position: 13436767 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 65.02% | 34.98% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 494 | 14.17% | 85.83% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213436767 | T->C | INTERGENIC | None |