Detailed information of SNP:
|
SNP ID:
sf1213437319(Gbrowse)
Chromosome: chr12 Position: 13437319 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 65.02% | 34.98% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 494 | 14.17% | 85.83% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 5.99% | 94.01% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213437319 | A->T | INTERGENIC | None |