Detailed information of SNP:
|
SNP ID:
sf1213455194(Gbrowse)
Chromosome: chr12 Position: 13455194 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 64.19% | 35.81% |
| All Indica | 768 | 44.27% | 55.73% |
| All Japonica | 482 | 93.78% | 6.22% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 355 | 45.63% | 54.37% |
| Indica II | 208 | 48.56% | 51.44% |
| Indica Intermediate | 205 | 37.56% | 62.44% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 83 | 77.11% | 22.89% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213455194 | C->A | INTERGENIC | None |